rs49562464 SNP Detail

Summary

• ID
  rs49562464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135718036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCT CATTAGGCCT GCTGACCAAA
  Y
  GAGTACCTCC CTGGTCAGTC GCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145546402	ENSMUSSNP5242758	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss319993403	CHEV_1_137686875	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49562464					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135718036 () rs orientation: forward

Symbol	Name	Function Class
Rr372093	regulatory region 372093	1781 bp upstream
Rr419278	regulatory region 419278	1148 bp distal
Rr419279	regulatory region 419279	1330 bp distal
Rr419280	regulatory region 419280	within coordinates
Rr419281	regulatory region 419281	272 bp distal
Rr419282	regulatory region 419282	1939 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron