rs49566017 SNP Detail

Summary

• ID
  rs49566017
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:39301983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAAAAAG CAGTCCTTTA
  AATCAGTTAC TAACATAAGC CTTGCCTAGA TCATAAAGAA GGTAAAGGTT CTCCAGACTG
  TAATGGACCT ATTGGTTTAA ATCTGTTAAC ATTCTCTATT TCCAAAATTT CTTTATTTTT
  AACAAATGTA AGGGAATTAT ATGGGTTAGT TGTGCCTCTA GCTGTTCTTG TACAAGATGC
  W
  CGAGTGTCTG TAATTTTTCT TAGTTAATGG CCACTGCTTT ACCCATATAA GCTTATTACT
  CAACCATTTT ATGGGTAGGG ACTTTGGTAT AATTTTAGCA GTGACCTTTC CCTTATATAA
  TTGAAAACTC AGCCCATGCT TTGTTCTGTT TTTGGACAAA CTGCAAAGTC AATGGTTGTT
  CTGGATGATA ACTTTCTATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60312171	NES15803709	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49566017					SNP	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312171	NES15803709	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:39301983 () rs orientation: forward

Symbol	Name	Function Class
Cyp2c29	cytochrome P450, family 2, subfamily c, polypeptide 29	within coordinates
Tssr156337	transcription start site region 156337	1941 bp upstream
Tssr156338	transcription start site region 156338	1975 bp upstream
Tssr156339	transcription start site region 156339	2000 bp upstream