rs49567175 SNP Detail

Summary

• ID
  rs49567175
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:66371352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGGAGG GGGAGGGGAG
  AAGAGGAGAG AAAACATACA CACAGGTATT CAATCAGAGA ACACTCATTG GAGTAAGTTC
  TCTGTGTCAC CATATGCATT TGAGAGATGA ATCTCAGACC ATTAGACATG GTGGCAAATG
  TCTTTAGCTG TTAAATTGTC TTGCTAGTCC TCCAGGAGCC TCTTTAAAAA TGCTCTGAGA
  K
  TTGTGTGTTC TTCTCTGTTA AGAGGTTTCA GTCAATCCTA TAGCAATAGT GTGATCAATT
  CCAAGCCTAT TTTATAGATG AAGAAACTGA GAGTTAAGTG GCTCCATCAA GGTCTTGTGT
  GCGGTAAGAG GCAGAGTCAG GACGTGAAGC CAGGCATTCT AGCTCAAATA AAATACTCCA
  TATATCTTCC CTCCAAACTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61174724	NES16684001	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49567175					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61174724	NES16684001	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:66371352 () rs orientation: forward

Symbol	Name	Function Class
Gm3822	predicted gene 3822	738 bp upstream
Gm73278	predicted gene, 73278	617 bp upstream
Gm73415	predicted gene, 73415	199 bp downstream
Rr378070	regulatory region 378070	within coordinates
Rr612424	regulatory region 612424	1594 bp proximal
Tssr46528	transcription start site region 46528	1750 bp upstream
Tssr51198	transcription start site region 51198	535 bp downstream