rs49568438 SNP Detail

Summary

• ID
  rs49568438
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148515587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTGTAAA GTTGTTACAG
  TGACTTGTGC AATGATGATT GAGGGAATGT ACCTAAACTA CTAAGCAAAC AGCACTTCAG
  ATTGATTGTT GAGTCGGAGG ACCTTGGTGA GAGAGTGGCA AGAGCAGTAT CAAGCTGGCT
  CCGAATTCAT CTATAGGGCC AGCTTCCTCC TTGCTCTGTG TGGAATCCAT CGTTCATAAA
  C
  TGATAAGCTT AAAAAAATGA AACCGGGCAT GGTGGCGCAC GCCTTGAATC CCAGCACTTG
  GGAGGCAGAG GCAGGCGGAT TTCTGAGTTC GAGGCCAGCC TGGTCTACAA AGTGAGTTCC
  GGGACAGCCA GGGCTACACA GAGAAACCCT GTCTCGAAAA ACCAAAAAAA AAAAAATGTT
  GGCCCAGGCA TGGTCGTGCA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147930938	ENSMUSSNP5743079	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49568438					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148515587 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12399	CpG island 12399	599 bp distal
Gm75182	predicted gene, 75182	930 bp downstream
Nxt1	NTF2-related export protein 1	within coordinates
Rr397374	regulatory region 397374	979 bp downstream
Rr566945	regulatory region 566945	1031 bp distal
Rr566946	regulatory region 566946	1161 bp distal
Rr566947	regulatory region 566947	within coordinates
Tssr20647	transcription start site region 20647	945 bp downstream