rs49568896 SNP Detail

Summary

• ID
  rs49568896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:70018147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTAGCTTC TAGAGTCACT
  TACATATGGT GAATATGGGT GGAGAACCAG ATTTTTCAAA AGTACCAATC CAAGTGTTTT
  GATCTTGCAT TTAATATAAG CAATAAACTC CTCACTTTAC CTTTTTTGGG GGGAATAACA
  GTTTAAAAAT ATCATTTTTG GAAGGGGGAA CCTCACTGTA TAAAACATCC TGAATATTTT
  Y
  CCCTTTCTTA TTCAAGGTTC TGCCCTCTTG AAATTCAACT TAAATTCTGG ATCTAACTGA
  GATTCAGTTT AGTCATTACT CCCAGAAGGG GTGCAAGCTC TGCTACATGT CCTGGCAGAT
  GCAAGAACCT ACATTTTTTT TTTTTTTACT TTTAATAAGG TTTTCTCTGT CTTTAATTTC
  CTGTGTAAGA AAACATTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147391222	ENSMUSSNP6132999	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49568896					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:70018147 () rs orientation: forward

Symbol	Name	Function Class
Gm50215	predicted gene, 50215	148 bp downstream