rs49568960 SNP Detail

Summary

• ID
  rs49568960
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:120124723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAC ACATTATACC TGGATGCAGG
  C
  GATCCAGAGC ACATAACCTG ATATC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145313875	ENSMUSSNP3786632	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss319932147	CHEV_1_122093570	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49568960					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:120124723 () rs orientation: forward

Symbol	Name	Function Class
Rr396237	regulatory region 396237	247 bp upstream
Rr417161	regulatory region 417161	155 bp proximal
Rr417162	regulatory region 417162	356 bp proximal