rs49569369 SNP Detail

Summary

• ID
  rs49569369
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127202548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGGGATG GCATATAAAA
  CCATGCTGCC CAGCCCAGAT CCCGAGAGCG ATTTACAAAG GGCTTCCAAC ATCCCCCCCC
  TTCCACAGCA ACACTTCCTC CCGGCTTCCC AAACGCTCCG AACAAAGACC TTCTTGAAGC
  ACTTACTGGA GCAGCAGCTT CTCTCAGCGA TTGCCTGTGA CCACGCAGCA GGAGGGGCCC
  R
  GAGAAGGGCG AGTCGGAGTC CCCAGCTTCC CTGCCTGCTG ATGTGTATGA GACAGCAGCC
  CAGGAACCGA CTTTCCCATC ACAGCCTCAG ACTGTAATCC ATGTGCTTCC CGCGGGCCAG
  TCCCAGCTGC CTACAGAGCA CCACATGATC TGCTCTGACA TCAGATCAGC CCCGAGACAG
  CCCATCCCAT CCGCCAGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135862641	ENSMUSSNP4797101	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320953858	CHEV_3_127111817	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49569369					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127202548 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	within coordinates
Gm52631	predicted gene, 52631	within coordinates
Rr584772	regulatory region 584772	1601 bp distal
Rr584773	regulatory region 584773	within coordinates
Rr584774	regulatory region 584774	58 bp proximal
Tssr35571	transcription start site region 35571	12 bp upstream
Tssr35572	transcription start site region 35572	38 bp downstream
Tssr35573	transcription start site region 35573	87 bp downstream
Tssr35574	transcription start site region 35574	115 bp downstream
Tssr35575	transcription start site region 35575	145 bp downstream