rs49570054 SNP Detail

Summary

• ID
  rs49570054
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84325074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACACCATG TGGTTCAGAC
  AGGATTTAGA GATTTCAGCT GGATCTGACC TAAAAACTCT CCTTCCTGAG GACTGGCTTT
  CATAGTCCCA GAAGGTGCTG TGCTGCAAGC TGCCGACAGA GGGAAGGAAT CAATAGCCTT
  ACCCAGCTGG GACACCCATG GAGCACTGTG ACCAGATATC CCTAGAGGTG CAAAGTGGTT
  M
  TTCTGTCTTA GCAGTAACAA ACAGCTGTCT AATTAGATTG TAGGCCTGCT CAGCAAGTGG
  GAAATCACAC CTAGTACTAT AAACCTAGCC AACTACAGGT GGCCGGTGAG GTCACGGATC
  TTAGGAGAAC CTATTTTTGT CTCTTTACTA AACCTGCATA ATTCCTCACT TCGTTCTAGA
  TTCTTAGCTT TATACCCACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145357699	ENSMUSSNP3859272	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss322745011	CHEV_8_86122344	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49570054					SNP	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84325074 () rs orientation: forward

Symbol	Name	Function Class
D830024N08Rik	RIKEN cDNA D830024N08 gene	1134 bp downstream
Gm18001	predicted gene, 18001	1568 bp upstream
Gm42029	predicted gene, 42029	1390 bp downstream
Rr178047	regulatory region 178047	1674 bp distal
Rr178048	regulatory region 178048	within coordinates
Rr181860	regulatory region 181860	127 bp proximal
Rr185419	regulatory region 185419	within coordinates