rs49570890 SNP Detail

Summary

• ID
  rs49570890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:93613370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTGGCA GGGGCGGTGC
  TGGCCGAGGG TAACAGGCAC AAATAGCAAC ACTCTTGGTA TTCTTCTAAC AGGCCAGCGT
  TTAGGAGACA AAGACCTTCA AGGGTGTTGG TGTGAGTGAA GGCTGTGTGT GCAGGCATGA
  AGAGATCCCT CCTACCGGGC CCGCCTCACT TGCAAGGTTT CGATTCTTAC TGTCCTGTTA
  R
  CATTTCTAAG GCAGCAGAGC CAAGGCTCAG AGCAGAGCCA GGAACTGAAA CCAAACTCTC
  TCAGACTTTA GAACTCTGCA CTCTCAACCT CAGCTCCGAG AAAGCGGAAC AGGAAAGAGG
  CATCCGCTAC AGCTACAGCG AAAGCTGGTT TGTTCTGGTT TCTTGGGCCA CACCACCCAT
  CTCTGACTTC CTGGAAACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60510881	NES16531459	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49570890					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60510881	NES16531459	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93613370 () rs orientation: forward

Symbol	Name	Function Class
Gm30881	predicted gene, 30881	within coordinates
Rr325602	regulatory region 325602	within coordinates
Rr370142	regulatory region 370142	within coordinates
Tssr142206	transcription start site region 142206	78 bp upstream