rs49572956 SNP Detail

Summary

• ID
  rs49572956
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30909537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGGCTTGC TAAGAAATCT AAATGAGATA GCTGGGTGCT
  TCCTGAGGGG TCCCTGATAG TATTACAGTC CATCAGGTGA AAATCTGGCT CACAAGGATA
  S
  AGAACAGTGG GCTAGCTTTA CTGTAAACAG AGATAGCTGA TGTGATTTAG ATTTTTGGGG
  CAGTGTCTGG GGAAAGGAAG GGGGCCCTAC CCAAGGTCA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60988984	NES16133971	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	G	C	C	G	G		C	C	C	C		C
ss148703268	ENSMUSSNP3475734	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss322140292	CHEV_7_31995131	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49572956					SNP	C	C	C	C	C	C	G	C	C	G	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60988984	NES16133971	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30909537 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18840	CpG island 18840	1535 bp distal
Gm37292	predicted gene, 37292	998 bp downstream
Gm73020	predicted gene, 73020	within coordinates
Rr645057	regulatory region 645057	1760 bp distal
Rr645058	regulatory region 645058	1124 bp distal
Rr645059	regulatory region 645059	1584 bp distal
Tssr65856	transcription start site region 65856	1749 bp downstream
Tssr65857	transcription start site region 65857	1722 bp downstream