rs49574272 SNP Detail

Summary

• ID
  rs49574272
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156764561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGG GGGGGGGGAC AGGATGGGAC
  G
  GGGCACATCA CACTCTAGAA ACAAC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145809496	ENSMUSSNP6519782	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49574272					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156764561 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930439D14Rik	RIKEN cDNA 4930439D14 gene			1803 bp upstream
Cpgi904	CpG island 904			1719 bp proximal
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2			Intron
				Noncoding-Transcript-Variant
Rr367037	regulatory region 367037			1821 bp upstream
Rr421284	regulatory region 421284			496 bp proximal
Rr421285	regulatory region 421285			1390 bp proximal
Rr421286	regulatory region 421286			1817 bp proximal
Rr421287	regulatory region 421287			1979 bp proximal
Tssr14474	transcription start site region 14474			845 bp downstream
Tssr14475	transcription start site region 14475			1791 bp downstream
Tssr14476	transcription start site region 14476			1820 bp downstream