rs49574517 SNP Detail

Summary

• ID
  rs49574517
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:107460851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCAGTGG TGGGAGATCA
  CAGAAGAAAT GGTTGACTTT ATTTGGTCCA CAAAAAGTCA GGCTCAATAA ACAACTGGTA
  CATGATGAAG AATTCACACA TCCACCCATG TAGGAAATAA CCAATAAGAT GAGGCAGACC
  TTGGGAGACA TGAGAGTGGA GTAGAGCAGG GGTGAGCAGA TGGCCACATA GCGATCATAG
  K
  CCATGGCAGC CAGCAGGAAG AACTCAGCAG TCCCAAAGAC CACATCAGAG CCAAGCTGGA
  CTATGCAACC AGCCACAGGG ATGGCAGTTC TCTCTCTCAG CAAACTCACA ATCATGACAG
  GTGTGACTGA GCTGGAGTAC CCAATGTCCA CAAAGGCCAA GTGGCTGAGG AAAAGGTACA
  TTGGGGTGTG AAGCTGAGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss61045692	NES16080012	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs49574517					SNP	G	G	G	G	G	T	G	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61045692	NES16080012	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:107460851 () rs orientation: forward

Symbol	Name	Function Class
Gm10156	predicted gene 10156	1395 bp upstream
Or5p5c-ps1	olfactory receptor family 5 subfamily P member 5C, pseudogene 1	within coordinates
Rr652939	regulatory region 652939	1247 bp proximal
Tssr68454	transcription start site region 68454	1316 bp upstream