rs49574573 SNP Detail

Summary

• ID
  rs49574573
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:13250558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C GCGCGCGCGG CCTCCGCACC CACCTGGGCA CCCGAGCTCG
  CGCCGCCTGC GCGCGCTCTG CGGGATCCAT GCGGAGAAGG GCCAGGGACC GCGGGACTCA
  M
  AACCTCTGCA GCCCCGAGCG CTGGACCCCG GTGCGCCGCT GGCCCCGGGG CGCGCGAGTG
  CTTCCGGCGG GGGCGTGGCC GAGACGGGGG CGGGGTGGGG A                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss148683951	ENSMUSSNP209043	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs49574573					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13250558 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2810030D12Rik	RIKEN cDNA 2810030D12 gene			224 bp upstream
Cpgi20110	CpG island 20110			within coordinates
Gm56825	predicted gene, 56825			84 bp downstream
Grtp1	GH regulated TBC protein 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr659872	regulatory region 659872			990 bp distal
Rr659873	regulatory region 659873			within coordinates
Rr659874	regulatory region 659874			407 bp proximal
Rr659875	regulatory region 659875			926 bp proximal
Rr659876	regulatory region 659876			1314 bp proximal
Rr659877	regulatory region 659877			1665 bp proximal
Tssr76386	transcription start site region 76386			218 bp upstream
Tssr76387	transcription start site region 76387			388 bp upstream
Tssr80428	transcription start site region 80428			18 bp downstream
Tssr80429	transcription start site region 80429			855 bp downstream