rs49574751 SNP Detail

Summary

• ID
  rs49574751
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34932883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAC TGGATGCAGC TGAATAGACC
  Y
  GATGCCTTTG TAAAGTGTGG GACTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60993609	NES16129820	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	T	T	T		C	T		C	T	C	C		T
ss148805363	ENSMUSSNP2080881	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss322156700	CHEV_7_36018477	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49574751					SNP	C	T	C	T	T	T	T	C	C	T	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993609	NES16129820	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34932883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	1101 bp proximal
Gm38989	predicted gene, 38989	within coordinates
Gm73040	predicted gene, 73040	1891 bp upstream
n-TTagt9	nuclear encoded tRNA threonine 9 (anticodon AGT)	1312 bp downstream
Rr645337	regulatory region 645337	73 bp distal
Rr645338	regulatory region 645338	297 bp proximal
Rr645339	regulatory region 645339	1173 bp proximal
Rr645340	regulatory region 645340	1235 bp proximal
Rr645341	regulatory region 645341	1902 bp proximal