rs49575002 SNP Detail

Summary

• ID
  rs49575002
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13427019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGCTGGG ATTAAAGGTG
  TGCACCATCA CTGCCCCGCT CAGGTTCAAC TCTTTTTTTT TATTTTCTGA GACAGTGTTT
  CTCTGTATAG CCCTGGCTGT CCTGGAACTC ACTTTGTAGA CCAGGCTGGC CTCGAACTCA
  GAAATCCGCC TGTCTCTGCC TCCGGAGTGC TGGGATTAAA GGCGTGCACC ACCACACCCG
  A
  CCAGATTCAA CTCTTTTAAG ACTTTTTGTT TTGCTAAAAA AGCAATAGTG CTTCGATTAT
  ACCTTTGAAT CTCTTCCCCC TCCCTTTTGT TGTTGTTTTG TTTTCTGTTT GTATGTCTTT
  TGTTTTTTGA GACAGGGTCT CAATATGAAG CTCTGGGTGT TCTGGACCTT ACCTCCAACT
  CAGAGAGCTG CCTGTCTCTG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146822607	ENSMUSSNP783398	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49575002					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13427019 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	1632 bp upstream
Cpgi1315	CpG island 1315	1576 bp proximal
Pex3	peroxisomal biogenesis factor 3	within coordinates
Rr368928	regulatory region 368928	1664 bp upstream
Rr427802	regulatory region 427802	1292 bp proximal
Rr427803	regulatory region 427803	1553 bp proximal
Rr427804	regulatory region 427804	1630 bp proximal
Rr427805	regulatory region 427805	1835 bp proximal
Tssr92399	transcription start site region 92399	1912 bp upstream
Tssr92400	transcription start site region 92400	1970 bp upstream
Tssr96771	transcription start site region 96771	1580 bp downstream
Tssr96772	transcription start site region 96772	1724 bp downstream
Tssr96773	transcription start site region 96773	1788 bp downstream
Tssr96774	transcription start site region 96774	1836 bp downstream
Tssr96775	transcription start site region 96775	1865 bp downstream
Tssr96776	transcription start site region 96776	1880 bp downstream