rs49575196 SNP Detail

Summary

• ID
  rs49575196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161321707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gaggaacgc atgctcttac ttgccaagcc
  atctctccag ccccCAGCTG CAGCTTTATT TCAAGTCTAT TTCAGAATAA ACACATTTTG
  TAACTGGGAA Ttgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgATTAT AGCTTTGATT
  Y
  GATGTTTTAA AACTCCCACC TAGGTGCGAT TGACAAAACT CGTGTATCTC TAAAATGGTA
  CCTATGTGAA GTCTGCAGTG TGATGACTTC ACGAGAACCG TGTTGTTTAA ACCACGCATC
  CTCACTCTTC AGCTCCTCAC CTCTCTGACT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	DBA/2J	LG/J	MOLF/EiJ	SM/J
ss60336298	NES15836095	PERLEGEN	MM_PANEL2	f	SNP	C	T	T		T
ss320080915	CHEV_1_163424269	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	DBA/2J	LG/J	MOLF/EiJ	SM/J
rs49575196					SNP	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60336298	NES15836095	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161321707 () rs orientation: forward

Symbol	Name	Function Class
Tnfsf18	tumor necrosis factor (ligand) superfamily, member 18	517 bp upstream
Tssr9690	transcription start site region 9690	511 bp upstream