rs49575407 SNP Detail

Summary

• ID
  rs49575407
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52655287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGTCCTCG CAGAGGACCT
  GAGTCCAACT CTCAGTATGT GGCTACACAT AGTGTGAATA TATACATTTT TTTTTAAAGT
  CGTCTTTAAA TGCCTTGACT TGTGGCTTTC TTTTAACTCT GTTAGTATTA AAACTCCATA
  TGACCATTTT TGAACACAAG AATTGAGGTG AACCTGAATC TATGCTTTTT GGGTCATGGC
  T
  ACTCATATTT GGCTCCAGAA ATGTCTCTTA CTACCCTTGA GGTGAGAGCT GTGTTCTTGC
  TTTGACACTG GTGTGAGATC TTCATTGTGC ATAGAGTTTT CTCACAGTAA GCACTTCACT
  TAATTTGTAG TGAATGTGCC ATTGGACGTG CCAGATGGGG GAAGCTGTCA TAGATGAACA
  TCCTAAATTT CTTGTAGTAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss137738435	ENSMUSSNP2959489	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs49575407					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52655287 () rs orientation: forward

Symbol	Name	Function Class
Gm35239	predicted gene, 35239	within coordinates
Tssr113445	transcription start site region 113445	861 bp downstream