rs49575421 SNP Detail

Summary

• ID
  rs49575421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114226633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGCATT AAAAGTTATT
  TACTTCTTCC AAAACGTGGG AGAAATTCCT CAAAGGGGCG GGGCATGCTT CACATATTAC
  TACCTTAGGG CATATTATTG AAGAGAACAC TCACCTGGTG GCTTTATAAA ACTACATTTT
  GGTTCTGTAG ATTAAGATCC ATTTGGCGCT CCCCAGTACT TACAACCACT TAGCTTCCAG
  R
  CCACTGCCTC AGCTCATTTT TCTCTTATCC AGATTGATCT GGACAACATG ATAGGGTTGG
  AAGGCAACCT CCCAAGAGGT AGGTCAATGA CTGCACCTTG CTGAAGGGAA GGCTATGTCC
  AGGGCAAGTT AGAAAGTCAG TGCGTGTACC TTGCACACAA TGTTTCTTAC AGCATCAGTG
  TTCAAAAGGG TAGGGTTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145296607	ENSMUSSNP3819912	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49575421					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114226633 () rs orientation: forward

Symbol	Name	Function Class
Arl15	ADP-ribosylation factor-like 15	within coordinates
Gm61348	predicted gene, 61348	662 bp downstream
Rr282443	regulatory region 282443	within coordinates
Rr282444	regulatory region 282444	1168 bp proximal