rs49575459 SNP Detail

Summary

• ID
  rs49575459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123269496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCATAAAG AAAAAGGAAA
  GGTAGTTGGA AATTTATTTG CTCATTTAGT TGGTTAATTT GGGAGACTTG TTCTGCCTTT
  TTTTTTTTTG AGAGTGCTAG CACAGTTGTA ACTGCAAAGA GGCCTATGCT AAGAGCTACA
  CTGCTTGGCT AGGCTTCCTG GCCTACCACC AGCAGTTTCC GTTTGTGTTT CAGAACCGGC
  Y
  GGTCAAGAGC AGGCTACAGG AAAATACTTT GTGGCATTGG GGAGAAAAGT CTGAAATTTT
  AAAGCCAGGG AGCACAGATC CTCCAAAGCG AGTTCCTCAG TTAACTTCTG AATGGAGGTT
  GCCTTGGGAA CAGGGAGGCC TACTCCCCAG CCACAGTGGC TCTTTCTCAA GGCAGCAGCC
  AACAGATAGA TGACCTGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss137077297	ENSMUSSNP2048548	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49575459					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123269496 () rs orientation: forward

Symbol	Name	Function Class
Lars2	leucyl-tRNA synthetase, mitochondrial	within coordinates
Rr193658	regulatory region 193658	105 bp proximal
Rr203065	regulatory region 203065	396 bp proximal
Rr208064	regulatory region 208064	within coordinates