rs49576653 SNP Detail

Summary

• ID
  rs49576653
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48408404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAC TTGGTATCTT TTGTTTTTAT
  Y
  AATCTTAGAA TGATTTTATA CTGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136454993	ENSMUSSNP6391634	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss322954394	CHEV_9_48305209	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49576653					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48408404 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	747 bp upstream
Cpgi21716	CpG island 21716	1084 bp distal
Gm5617	predicted gene 5617	1132 bp downstream
Gm70225	predicted gene, 70225	within coordinates
Rbm7	RNA binding motif protein 7	1805 bp upstream
Rr195326	regulatory region 195326	204 bp distal
Rr206379	regulatory region 206379	603 bp distal
Rr401354	regulatory region 401354	1586 bp downstream
Tssr2862	transcription start site region 2862	1206 bp upstream
Tssr84989	transcription start site region 84989	1989 bp downstream
Tssr84990	transcription start site region 84990	1884 bp downstream
Tssr84991	transcription start site region 84991	1838 bp downstream
Tssr84992	transcription start site region 84992	1704 bp downstream
Tssr84993	transcription start site region 84993	1653 bp downstream
Tssr84994	transcription start site region 84994	1194 bp downstream
Tssr89394	transcription start site region 89394	1831 bp upstream
Tssr89395	transcription start site region 89395	1786 bp upstream
Tssr89396	transcription start site region 89396	1769 bp upstream