rs49576685 SNP Detail

Summary

• ID
  rs49576685
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:120755317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAAATCA GTCTGGCGGT
  TCCTCAGAAA ATTGGACATA GTACTACCAG AGGATCCCAT AATACCTCTC CTGGGCATAT
  ATCCAGAATA GGTCCCAACA AGTAAGAAGA ACACATGTTC AACTATGTTC ATAGCATCCT
  TATTTATAAT AGCCAGAAGC TGAAAAGAAC CCACATGCCC CTCAACAGAG GAATGGATAC
  M
  AAAAAATGTG GTACCTTTAC ACATTGGAGT ACTACTCAGC TATTAAAATG AATGAATTTA
  TGAAATTCCT AGGCAAATGG TTGGACCTGG AGGGCCTCAT CCTGAGTGAG GTAATTTAAT
  CACAAAAGAA CTCAAATGAT ATGTACTCTC TGATCAGTGG ATATTATCCC ATAAACTTAG
  AATGCCCAAG ATATAAGATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss134396153	ENSMUSSNP869554	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325960953	CHEV_X_118959229	CHEVERUD	SCREENING_POP	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49576685					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:120755317 () rs orientation: forward

Symbol	Name	Function Class
Rr395603	regulatory region 395603	393 bp upstream