rs49577074 SNP Detail

Summary

• ID
  rs49577074
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84325073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACACCAT GTGGTTCAGA
  CAGGATTTAG AGATTTCAGC TGGATCTGAC CTAAAAACTC TCCTTCCTGA GGACTGGCTT
  TCATAGTCCC AGAAGGTGCT GTGCTGCAAG CTGCCGACAG AGGGAAGGAA TCAATAGCCT
  TACCCAGCTG GGACACCCAT GGAGCACTGT GACCAGATAT CCCTAGAGGT GCAAAGTGGT
  K
  ATTCTGTCTT AGCAGTAACA AACAGCTGTC TAATTAGATT GTAGGCCTGC TCAGCAAGTG
  GGAAATCACA CCTAGTACTA TAAACCTAGC CAACTACAGG TGGCCGGTGA GGTCACGGAT
  CTTAGGAGAA CCTATTTTTG TCTCTTTACT AAACCTGCAT AATTCCTCAC TTCGTTCTAG
  ATTCTTAGCT TTATACCCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145357695	ENSMUSSNP4787862	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss322745010	CHEV_8_86122343	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49577074					SNP	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84325073 () rs orientation: forward

Symbol	Name	Function Class
D830024N08Rik	RIKEN cDNA D830024N08 gene	1133 bp downstream
Gm18001	predicted gene, 18001	1569 bp upstream
Gm42029	predicted gene, 42029	1391 bp downstream
Rr178047	regulatory region 178047	1673 bp distal
Rr178048	regulatory region 178048	within coordinates
Rr181860	regulatory region 181860	128 bp proximal
Rr185419	regulatory region 185419	within coordinates