rs49577168 SNP Detail

Summary

• ID
  rs49577168
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127683259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGTGCTA TGTTTTCCTT
  TGATCAGAAT TCTGATAAGC TGCAGTTGTT GCTGTAGGAA AAAACAGGCA CAAAGCAGGT
  CATTTCCTCT TCCTGTGCCA AGATTAAGCA CAGATGCCAA TGATGTTAAA TGAAAAGAAG
  GAAAGCCCTT TAGATACAAG AGAATATTAG ATTATAGAGT AGAAAGTATA TTTTCTATTA
  M
  ATTCATTGAA AATTTATTTT ATGTATGTAG TCTAATTTTC AAATGTCTTA TCAATTCCCT
  TACATGCACA CCCATAACTA ACGTTTTTTT GCAGATAAGT GGTTGCTATC GAAGAGCTGT
  GAGCCCAGAG CAGACAAACC TAAAGACAGG AGACTAAGGT GCAGGGAGGC ACAAAGATAA
  GGCTTCTACT TATGCTCCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874292	ENSMUSSNP3871131	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
ss320957926	CHEV_3_127592528	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49577168					SNP	A	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127683259 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584892	regulatory region 584892	within coordinates
Rr584893	regulatory region 584893	520 bp proximal
Rr584894	regulatory region 584894	1186 bp proximal