rs49577894 SNP Detail

Summary

• ID
  rs49577894
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32746800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCACGCAC GCTCGAGAGT
  GTGTGTGAAG TCCATGGCAT GTGTGGAGGT TAGAAGACAA CTCTTGGATA GGAATTGGTT
  CTCTCTTCAT ACTTTGTGTG GTCTGGCTAC TGAATTCAGG TCATTGAACA TGGGTGCTAG
  CCCTCTAATT ACAAGCATTC TAGCAGGCTA GGACTTTGTT TTTACACCCT GGATAATTAC
  R
  TGGTGGTTTC TTAGGGACGA CCTGGCCCAG CTGCCCTTCC TGACCATGTG CATCAAGGAG
  AGTCTGCGGC TGCACCCCCC AGTTACGGTC ATTTCCCGTT GCTGCACCCA AGACGTTGTG
  CTTCCAGATG GCCGGGTCAT CCCTAAAGGT GTGGACTGTA TGGGGAGGTG GCTCCTGATG
  GTCCCCAAGG GGGCAGCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62677634	NES17315078	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49577894					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62677634	NES17315078	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32746800 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8980	CpG island 8980	773 bp proximal
Cyp4f17	cytochrome P450, family 4, subfamily f, polypeptide 17	within coordinates
Rr405183	regulatory region 405183	947 bp upstream
Rr525770	regulatory region 525770	1132 bp proximal