rs49578091 SNP Detail

Summary

• ID
  rs49578091
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28776659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCGTCGG AGTTAGAAGG
  AATGCAGTGG GGACAACTAC ACTGGGGACT GTGTAAGAAA CACACAGACA CTATGCAAGG
  TATGCATGGG ATCTGAACTC CCTCAGTTTT GGTACCTCCC TGGGGTTCCT GAAAACCATC
  TCTGAGGGAT ACCAAGGGAT GACTGTAGCA GATACTGAAT TTCCTCATGC TAAGTTTTAT
  K
  ATGCCACATT GTATGTTGGT TTCTGTTTAA CACATTAGAA AGTCAATTAG AATTTGTGTG
  TAGGCAAAAA TAGGTACATG AGAAAAATCT GTTCACATAT TTTAAAAACA ATTCTTATGC
  AGTAAAGGCT TCTATCTCAT TTTATAACCA CTCTGTATGG ATATCCACCA TAAGTAAAAC
  ACTTAAATGT GCAATACAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52346833	NES15375475	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49578091					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52346833	NES15375475	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28776659 () rs orientation: forward

Symbol	Name	Function Class
Rr260043	regulatory region 260043	1659 bp distal
Rr269361	regulatory region 269361	within coordinates
Rr269362	regulatory region 269362	328 bp proximal
Trappc12	trafficking protein particle complex 12	within coordinates