rs49578700 SNP Detail

Summary

• ID
  rs49578700
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163482845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACCAACA GGGCAAAGGC
  ACAACGTCTC TAATCAATTG CAGAAGGTTA ACAATCCTGA GCCACAGTAA TGTCAGATCT
  GTAGCTTCCA CCCATTGCTA TAGCTTATAC TGATTTGTGA TACTTTGCTT GAAAGTACGA
  GCAAACTAAT TATAATGGTT CGTTTATACT TGGCCCAGGG AGAAGCACTA ATAAGAGGCG
  Y
  AGCATTGTTG GAGTAGGTGT GTCACCACGG GCATGGGATT TAAGACCCTC TTTCGTGCTG
  CCTAGAAGCT AGTCTTTTCC TGTTTGCCTT TGGTTTTTTT TGGGTTTTTT TGTTTTGTTT
  TGTTTTTGTT TCTGTTTTTT TTCGAGACAG GGTTTCTCTT TATAGCCCTG GCTGTCCTGG
  AACTCACTTT GTAGACCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148207610	ENSMUSSNP109444	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49578700					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163482845 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397465	regulatory region 397465			1732 bp upstream
Rr569443	regulatory region 569443			123 bp distal
Rr569444	regulatory region 569444			277 bp distal
Rr569445	regulatory region 569445			644 bp proximal
Serinc3	serine incorporator 3			Intron
				Noncoding-Transcript-Variant
Tssr27319	transcription start site region 27319			1583 bp upstream