rs49579181 SNP Detail

Summary

• ID
  rs49579181
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45572252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTAAAGT TTGGAATCTT
  AAATGAGGAT GGATGGAGGA GGGGGACAGA AACAAGGGGA AGTCTAACTC TGACCCTGGA
  GAGAGTAGAG AGTGGGTCAC TGAGGACAAA ATTGGGGGGC TGGGATGGAA GCTTGTACTT
  CTCCATGATT GCAGGGACAG GAGGCTGCAT CCCAGGCCTG GGAGGAGTGT GGACCAGGAG
  M
  AAGGAAGCTC CACTGGCTGA GAAGCCAGCT GGGATGTTTT AATATTCCTT GAGAGTTGAA
  AAAGTTCGGT ACTTGGGGTG CCTAGGGGAG GCGTTTAGGG AATCCCCAAC AATAGTGCCC
  AATAGAAGTG GAAGTATCTG GAGACACTAG AGGTAGGGGT GGTGGGATCT CCCCTGCCCA
  AGCCTCTAAG GAGCGCGGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149150510	ENSMUSSNP3922507	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49579181					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45572252 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19109	CpG island 19109	138 bp proximal
Cpgi19110	CpG island 19110	1138 bp proximal
Emp3	epithelial membrane protein 3	1424 bp upstream
Gm45442	predicted gene 45442	within coordinates
Odad1	outer dynein arm docking complex subunit 1	1244 bp upstream
Rr368318	regulatory region 368318	within coordinates
Rr368319	regulatory region 368319	148 bp upstream
Rr400324	regulatory region 400324	1186 bp downstream
Rr400325	regulatory region 400325	529 bp upstream
Rr646609	regulatory region 646609	957 bp distal
Rr646610	regulatory region 646610	within coordinates
Rr646611	regulatory region 646611	354 bp proximal
Rr646612	regulatory region 646612	1438 bp proximal
Rr646613	regulatory region 646613	1849 bp proximal
Tssr2257	transcription start site region 2257	12 bp downstream
Tssr2258	transcription start site region 2258	1281 bp downstream
Tssr66661	transcription start site region 66661	373 bp upstream
Tssr66662	transcription start site region 66662	706 bp upstream
Tssr66663	transcription start site region 66663	1374 bp upstream
Tssr72497	transcription start site region 72497	1945 bp upstream
Tssr72498	transcription start site region 72498	1701 bp upstream
Tssr72499	transcription start site region 72499	1516 bp upstream
Tssr72500	transcription start site region 72500	1381 bp upstream
Tssr72501	transcription start site region 72501	360 bp downstream
Tssr72502	transcription start site region 72502	591 bp downstream