rs49580613 SNP Detail

Summary

• ID
  rs49580613
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:3399119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATT TACAACAACA CACAGACCAG
  A
  AATTTTAAGC TCAGAAAATT ACCAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132926217	ENSMUSSNP630970	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49580613					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:3399119 () rs orientation: forward

Symbol	Name	Function Class
Rr134883	regulatory region 134883	482 bp proximal
Rr146113	regulatory region 146113	within coordinates
Rr146114	regulatory region 146114	681 bp proximal
Rr378834	regulatory region 378834	1560 bp downstream
Rr399551	regulatory region 399551	274 bp upstream
Samd9l	sterile alpha motif domain containing 9-like	within coordinates
Tssr59689	transcription start site region 59689	182 bp downstream
Tssr59690	transcription start site region 59690	332 bp downstream
Tssr59691	transcription start site region 59691	426 bp downstream