rs49580863 SNP Detail

Summary

• ID
  rs49580863
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97276198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCATCTTCCT GGTTCAAATT TCCATTTATG TCACAAGTGT
  CAACCAGGTT AAATGTGCAA GGTGACAGCT GTCAAGGCCC TGACACACAC TGGAAACTAG
  K
  TTTTTTTTTT TTTTTAATAA TTAGACCAAA GGGCTGAGGC CTGGTAAGCA GGTAGCGCCA
  CCTGGGAGGA GGAGACTGGG TCCTGCCAGC GGTTCCCCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148436771	ENSMUSSNP2934415	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49580863					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97276198 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7620	CpG island 7620	1006 bp distal
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr391162	regulatory region 391162	271 bp downstream
Tssr132866	transcription start site region 132866	1615 bp downstream
Tssr132867	transcription start site region 132867	1142 bp downstream
Tssr132868	transcription start site region 132868	1121 bp downstream