rs49581896 SNP Detail

Summary

• ID
  rs49581896
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:11505429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAGCAGC TTATGGACAA
  AATGTCAAAC TTGTCCAGAC ATGTCTTGTA GCAGAAAGAT TGCACATCAA TGAATAGACT
  GTTTATTTAC TCAGTACCAG CAACGTTCTG CAGCATCATA CTATTCCCCA GTACCCATGT
  GGACAGAGTA GGCTCTCAGA ACACTGGATG AGAGCTTCAC ACAACCATTG CAACAACCAG
  R
  ATCATGACAA TGGCAAGTCT GTATTCACTT ATGGCTCCAT ATGCAAAGCC AGACTGTGAA
  GAGAAACCAA CATCCAGAAA AGCTGAGTAG TCTTCTAAAG ACGCAGAACC AATAACAAGA
  TTGAGCCCCA GCTCTGACCA CAGAACTCAG GCACAGGGAA ACTCCCAATC TGTCTGCTAT
  GGCCTGGAAC CCAGCATCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52615880	NES15504978	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49581896					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52615880	NES15504978	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:11505429 () rs orientation: forward

Symbol	Name	Function Class
Rr387978	regulatory region 387978	within coordinates