rs49582457 SNP Detail

Summary

• ID
  rs49582457
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26052417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGGAGCTG CCTGCGGCCA TTAATGGCTG AGAAACAAGC
  ACGTGACACG CTGACACCGA AGGACCTTCT GCGGTTGCTA TAGAAGTAGC TGCGGGTGCA
  M
  GGCTGGACTC TTGCCCTTCT CGCGGTCATG GGGAGGAGCT TCTTCAAGGG CGGAGCCGGC
  TGGTTTCCTT GGAGAGCGCC TGCACCAAGA CCCTTTGACC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60255642	NES15703166	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49582457					SNP	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60255642	NES15703166	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26052417 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8785	CpG island 8785	within coordinates
Gm20683	predicted gene 20683	1022 bp downstream
Gm56915	predicted gene, 56915	within coordinates
Jmjd8	jumonji domain containing 8	1600 bp downstream
Rhbdl1	rhomboid like 1	1022 bp downstream
Rr405106	regulatory region 405106	324 bp downstream
Rr523679	regulatory region 523679	465 bp distal
Rr523680	regulatory region 523680	within coordinates
Stub1	STIP1 homology and U-Box containing protein 1	524 bp upstream
Tssr143193	transcription start site region 143193	289 bp downstream
Tssr146863	transcription start site region 146863	566 bp upstream
Tssr146864	transcription start site region 146864	477 bp upstream
Tssr146865	transcription start site region 146865	41 bp upstream