rs49583245 SNP Detail

Summary

• ID
  rs49583245
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53532242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTTTTA AGTAACACGC
  AATCCAGTCA TGCAGCATTA TTAAAAAAAA AAATCACAGA TATGTAAAAG TTTGATCCTC
  AGAGAGGGGA GTCAGGGAGT AGTATTTAAA TAGTGTATGT CTGGTTATTC TCCAGGTGTA
  GTATGGTCAA AGGCTGCTAC AAACATTTAG ATAACAAATG TTATCTGCAC ACCAATTTGC
  W
  TTTCCTGAGA CTTGTCCGGA ACTGCCATTG ACACAGCAAT TTTACTTTTT AAAGGGCGGG
  GGTGGAGGGG GGGAGAAGTA AACTGAGTCT GGAGAGAGAG AGTTCAGTCA GTAAAGAGGG
  TCAGAGCTCC ATCCCCAGCA CCCATTACTT TGGGGTGGAG AAAAGAAATC CCTGGGCTTC
  TCTGGGCCAG CTACCTTAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61805830	NES17722813	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49583245					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61805830	NES17722813	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53532242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5620	CpG island 5620	627 bp distal
Rr403780	regulatory region 403780	603 bp downstream
Rr480032	regulatory region 480032	319 bp distal
Sptlc1	serine palmitoyltransferase, long chain base subunit 1	841 bp upstream
Tssr122583	transcription start site region 122583	833 bp upstream