rs49583247 SNP Detail

Summary

• ID
  rs49583247
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97795362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTTTCAT CTTGCTGTTG
  CTACATGACG AACACGGGAC CTAATCTGCC GGGTGTTTTC TAGGCCAGAG TGGAGGAAGG
  GTCTGGGTTC AGGTGGAGCT AGCGGCCCAG AGCATCCAGC CAACAGGCCC AGGCCGGGCT
  CCAGTGCTTC AAAGGAAGAA AAGGGCATCA CCAATCTCCC TGCTGTTTCC AGCTAAGGCA
  R
  ATAAATAAAT ATCCAAGGAA GAAGAGACTA AAAAAGGCAA AGATGAGAGC TCTGCAAATC
  CCCTAACTAG CCCAGCTCCT GAGTCACCTT TCCTTTGGCT CAGCCCAGCA GGTGTTGCCT
  CCAGCCTCAC CCACATCGGT ACAGATCAAG CAAAGACCTT AGGATAGAAA CCTGGATTCC
  CACCATTTCT CCTGTGCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	FVB/NJ	WSB/EiJ
ss60427117	NES15930606	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	FVB/NJ	WSB/EiJ
rs49583247					SNP	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60427117	NES15930606	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97795362 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13598	CpG island 13598	129 bp proximal
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	within coordinates
Rr581573	regulatory region 581573	651 bp proximal
Tssr34685	transcription start site region 34685	582 bp downstream
Tssr34686	transcription start site region 34686	640 bp downstream
Tssr34687	transcription start site region 34687	781 bp downstream
Tssr34688	transcription start site region 34688	865 bp downstream