rs49583335 SNP Detail

Summary

• ID
  rs49583335
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:33959647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGATCT TCAGCACACA
  AGGCTCAGCA CTGACAGCCA ACAAGGAATG GAGCAGGTCT GAGGCGACCA TGCCGTAGGT
  GACCTCTGAG GAAGGCACTG AGGAAGAACA AAGCACACAC GACACTCAGG ACCCCACTAG
  CTGCACAGAA ACACATTCTG AAGGTTTCCT GTCTCTCTTG GTTCCTCAAG CTTCACAGAC
  W
  TACATCTTTC AGTTCTTGTT CTACCCCTCT CTTTCCAGCG TCCAATTGTT GAAGGGAGTC
  TAGGAAGATG GTGTGTTTCC CACTGAGCAC GAAAGCAAGC ACAAGCGACA CCCAGACTGA
  CAGCAGCCCC AGCCATCAGC TCCCAAATAC CTGAGGAACT GAGGTCTGCT CCCGCCTGAA
  GTAAGGCGGC CGTGTCTTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss62244540	NES17198653	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs49583335					SNP	A	T	T	T	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62244540	NES17198653	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:33959647 () rs orientation: forward

Symbol	Name	Function Class
Shld2	shieldin complex subunit 2	within coordinates