rs49584018 SNP Detail

Summary

• ID
  rs49584018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:91366896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATAAACA TGGGGATGTG
  TATATCTTAA AGGTACAGTT CAATAAATCT TAATATTTAC CTGCCCTTAA CCTCCATCCT
  GTATTTTTAG AGCCTTCTCT CTTCATGTTT CTTCTGATTT CCACCACCAC ACCTTTCCCT
  CCTGCTCTGG AGTTACCTGT AAAAGAAGCC GTGTGGCATG TGAGGAGTTA GTATTCCTTT
  Y
  GCTCCTAGAG GAACGAGCAA GCAGTTATAC TTCCAAGAAG AAAATTGACA CAATCTAGTT
  TACATTTGTA GCTAATATTC TTGGTGGGTG TGAGAAGAGC AAGGTGGCAC TTAAGTGTTC
  TCTTCATTCT GGATTTCTGG AGAGGGTGGA TGAGAATGAA AAGTGTCTAG GATTCTAAGC
  AGATTCGTAA AACCAGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52458801	NES15442055	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49584018					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52458801	NES15442055	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:91366896 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4953	CpG island 4953	261 bp proximal
Rr258556	regulatory region 258556	within coordinates
Rr265753	regulatory region 265753	104 bp proximal
Tshr	thyroid stimulating hormone receptor	871 bp upstream
Tssr114585	transcription start site region 114585	316 bp upstream
Tssr114586	transcription start site region 114586	344 bp upstream
Tssr114587	transcription start site region 114587	868 bp upstream
Tssr114588	transcription start site region 114588	902 bp upstream