rs49584046 SNP Detail

Summary

• ID
  rs49584046
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:12827082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TCTACAGTGA AGGGAAATTT GTCTGTGGAG GATGGAGGAC
  GTCTTTCCTT AAGTCTTTTA CTAAACCAGA GACTGGAGGT GGCTGCTTTT GGTCATCTTA
  G
  CAATGGATAG TTTTGGGCTA GCACAACTGT CCAGCTAATA AGGACAGCAG GCAGTTTGCT
  TGGAAAATGG ACAATAGCTC AGTATTTTGT GAATACAAAT C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147089624	ENSMUSSNP5816160	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49584046					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:12827082 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6961	CpG island 6961	1640 bp distal
D15Mit199	DNA segment, Chr 15, Massachusetts Institute of Technology 199	256 bp distal
Drosha	drosha, ribonuclease type III	within coordinates
Rr311575	regulatory region 311575	481 bp distal
Rr369911	regulatory region 369911	1855 bp downstream