rs49584595 SNP Detail

Summary

• ID
  rs49584595
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70346818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCTTAAA AAAAAAAAAA
  AAAAAAAAAA AAGACTTTCT AGTTAACACA GTTACTAGAT AAGAAGAAAG CATAGGTTCA
  AGTATTTGTA AAGACAAGGA ACATTTTATC ATTATTTTCC TGTATCTGTT TGGAAACTCT
  AATTAGTCTC CCTTCTGCAG TTGAATTTCT AAAGCTATAC AGGTTAAGTA TGTAGGTATG
  K
  TAGTGTGGGG GCGATTAGAA GGTAAATATA TCCAGCAAGA TAAAATGAAA AAGAATCCCA
  TTTCATGGGA TTAAAAAAAA TTAATAACTG CTATGGAACA TTCCTAAGAC ATATAGAGCT
  AAAATTTTTA CATTTAAATA TTACTTTGGG CTCTTAATAG CCAACAAAAT AAATTTATAG
  GCCCTATTTA AAAAAGAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss139680818	ENSMUSSNP475008	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49584595					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70346818 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bin3	bridging integrator 3			Intron
				Noncoding-Transcript-Variant
Rr494842	regulatory region 494842			1937 bp distal
Rr494843	regulatory region 494843			313 bp proximal
Rr494844	regulatory region 494844			1602 bp proximal
Rr494845	regulatory region 494845			1696 bp proximal