rs49586256 SNP Detail

Summary

• ID
  rs49586256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34886664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGTGTGC CAGATTCAAG
  TGCCAGGGAA GTGAAGCCAT CTGTTCTTGG AAAGCAGGAA GGTAAATGGC CGGGTAGAGT
  CTAAAGCAAG GGTTAAAGGC CACGAAGCTG ACCTTCCTGG CAGAGGTGGC CACAGAATCC
  GAGGAGAGGT AGCGAAGTAG CCAGGAGCAG ACCAAGCCTC CAGGAGAGCA CCCACTCAGC
  Y
  CTGGGATCCA AGTGAGCACT CTCGTGATCT GGTGGCATCT GAATGGGTGC TCTCATGGCC
  TGGCCCCTCT CGCTCTTCCT ACAGATGGTG CTTTTTGCAT AGGTAGAATG CCCCGGGGAC
  AGGGTTGGGC AGCAACCCCA CCTCTGTCTG TCCCTTGACT CCTGAAGGAG AACTGGACTA
  GACCTCTTGG GCGGGGCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60993775	NES16130697	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49586256					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993775	NES16130697	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34886664 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18861	CpG island 18861	444 bp distal
Rr645330	regulatory region 645330	1517 bp distal
Rr645331	regulatory region 645331	844 bp distal
Rr645332	regulatory region 645332	1250 bp distal
Slc7a10	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	within coordinates
Tssr65893	transcription start site region 65893	870 bp downstream
Tssr65894	transcription start site region 65894	831 bp downstream
Tssr65895	transcription start site region 65895	807 bp downstream