rs49586522 SNP Detail

Summary

• ID
  rs49586522
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:23293929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACC GGAGGCACAT TTTCTGCCTC
  T
  GTAGCTCTCT CTTGGGCCTC GAAGA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148843725	ENSMUSSNP6617991	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss322527938	CHEV_8_23914385	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49586522					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:23293929 () rs orientation: forward

Symbol	Name	Function Class
1700041G16Rik	RIKEN cDNA 1700041G16 gene	1698 bp upstream
Ap3m2	adaptor-related protein complex 3, mu 2 subunit	within coordinates
Cpgi20156	CpG island 20156	1394 bp proximal
D8Dcr5	DNA Segment, Chr 8, Derry C. Roopenian 5	1799 bp distal
Rr381798	regulatory region 381798	within coordinates
Rr400791	regulatory region 400791	1653 bp upstream
Tssr80611	transcription start site region 80611	21 bp upstream
Tssr80612	transcription start site region 80612	1683 bp downstream