rs49586837 SNP Detail

Summary

• ID
  rs49586837
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:40643834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGTGTGGC ATCTGTCACA GTGCTAACAG CTCATATGCT
  AGCTTTACAG ACTCAGACTT AAAGCCCCCC TGCTTTAAAC CCCCATTGGC TCCTCTTGGC
  T
  TGTGTACCAA GAATGACCTA ATCCCCTCAG TATGTTATTG CAAAAGAAAA AAAAAACTAT
  TCATAATACT TGCTGGAGGT GGAAAGGAGA AGTCTTTCT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136336813	ENSMUSSNP1747983	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss322918986	CHEV_9_40540621	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49586837					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40643834 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clmp	CXADR-like membrane protein			Intron
				Noncoding-Transcript-Variant
Gm68229	predicted gene, 68229			936 bp upstream
Gm68234	predicted gene, 68234			869 bp downstream
Rr1916	regulatory region 1916			131 bp downstream
Rr676903	regulatory region 676903			1581 bp distal
Rr676904	regulatory region 676904			947 bp distal
Rr676905	regulatory region 676905			568 bp distal
Rr676906	regulatory region 676906			within coordinates
Tssr84462	transcription start site region 84462			1560 bp downstream
Tssr84463	transcription start site region 84463			1524 bp downstream