rs49587525 SNP Detail

Summary

• ID
  rs49587525
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:33191033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCATGAAC TGGCAATATG
  AGCTGTCTGT AGTATTCTGC CTAAGCACCA AGCAGCCCTC GATTTGGAGT AGGAAAGCAA
  CAGCCTACAA GTAACCAGGC AGCAAGAAGA TGCTGTACTT ACATGGCTAT GTCCCCTTTC
  ATTCCTCAGG CACCTTCCAA TCCATAGCAG TATTTGCATC TTCAAATGCT GTCAGTGAGC
  C
  AGGTTTAGGT CTCCTAGTTG TGGTAGGATG TGATCAATGA AGCTCATGGT GGCAAAGCTG
  TTGCTGAGGC TGGACGTTCA CTCTGAAAAA ACACGGAAGA GAGAGGGAGT CTGCCACTGA
  TAGCTAACAT CAGGCTCTCC AAACCCACCT CCATCAGTTT GGCCCATGGA GGCTGCCTTG
  AGCTCAGGGA AAGATGCGTA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss137582673	ENSMUSSNP4027260	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs49587525					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:33191033 () rs orientation: forward

Symbol	Name	Function Class
F730043M19Rik	RIKEN cDNA F730043M19 gene	within coordinates
Gm16267	predicted gene 16267	1395 bp downstream
Rr256081	regulatory region 256081	433 bp distal
Rr256082	regulatory region 256082	568 bp proximal
Rr260246	regulatory region 260246	1433 bp distal
Rr263299	regulatory region 263299	764 bp proximal