rs49587993 SNP Detail

Summary

• ID
  rs49587993
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135692407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTC CTAAAGGAGA GAGGGTTGGT
  C
  AAGGCAGGAT TCTGCCAGGT TGGTC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145545473	ENSMUSSNP4789317	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss319993119	CHEV_1_137661246	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49587993					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135692407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi797	CpG island 797	870 bp proximal
Gm70736	predicted gene, 70736	within coordinates
Phlda3	pleckstrin homology like domain, family A, member 3	1450 bp upstream
Rr372092	regulatory region 372092	602 bp upstream
Rr419268	regulatory region 419268	442 bp distal
Rr419269	regulatory region 419269	960 bp proximal
Tssr223	transcription start site region 223	1401 bp upstream
Tssr224	transcription start site region 224	1520 bp upstream
Tssr8974	transcription start site region 8974	1416 bp upstream
Tssr8975	transcription start site region 8975	1538 bp upstream
Tssr8976	transcription start site region 8976	1549 bp upstream
Tssr8977	transcription start site region 8977	1568 bp upstream
Tssr8978	transcription start site region 8978	1572 bp upstream