rs49588039 SNP Detail

Summary

• ID
  rs49588039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122294493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGAA ACCAGGGGGT TCCCAGCTCC
  Y
  AGGACAGGTG GAGGCTTTCA CAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss52524814	NES15586785	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	C	C		T	C
ss147010157	ENSMUSSNP1193101	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				C
ss324857800	CHEV_14_122456303	CHEVERUD	SCREENING_POP	f	SNP								T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs49588039					SNP	T	T	T	T	C	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52524814	NES15586785	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122294493 () rs orientation: forward

Symbol	Name	Function Class
Gm63354	predicted gene, 63354	653 bp downstream
Gm63496	predicted gene, 63496	within coordinates
Rr498317	regulatory region 498317	759 bp proximal
Rr498318	regulatory region 498318	973 bp proximal
Tssr127312	transcription start site region 127312	1257 bp upstream
Tssr130315	transcription start site region 130315	981 bp downstream