rs49588159 SNP Detail

Summary

• ID
  rs49588159
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:88484906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGCCGGGC TAGAGACCCC
  GCTGCAGGCC CCCAACCAAC GCTGCTGGTT CATATTGGAT CCCATTGGCA TCCTGTGCGC
  CATGGCCGCG TGGGCGCTGG TACTGAGCGG CGGATGGGTA CTGTTCCGGG ACCTGCTTAT
  ACCATCTAAC AACATGTTGT ACATAGTAGC CAATGGTGTG GTCTTCCATC TGCTGGCCTC
  R
  TTGGCACTCG CGTCACACCT ACGGACTATG CTGACCGACC CAGGCTCTGT GCCCCTGGGT
  AACCCGCCCG GGCCTGACAC AGTGTCCTAC TGTACCGACT GCCACTCTGC CATACCGAGG
  ACAGCTTGCC ACTGTACAGT GTGCCAGCGC TGCATCCGCA AGAACGACCA CCACTGTCCG
  TGGATTAACA ACTGCATTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63579238	NES17028513	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49588159					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63579238	NES17028513	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88484906 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7510	CpG island 7510	within coordinates
Gm62180	predicted gene, 62180	within coordinates
Tssr132609	transcription start site region 132609	371 bp downstream
Tssr135809	transcription start site region 135809	490 bp upstream
Zdhhc25	zinc finger, DHHC domain containing 25	Coding-Synonymous