rs49589045 SNP Detail

Summary

• ID
  rs49589045
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45177015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGG GAGAGCATCC AGAGCCTCAC
  W
  CTAGGATCAA ACCTTTCCAA CTCTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61388312	NES16764911	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T	A	T	T		A	T	A	A		A
ss136408225	ENSMUSSNP6011527	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T						T
ss322942737	CHEV_9_45073800	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49589045					SNP	A	A	T	T	T	T	T	A	T	T	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388312	NES16764911	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45177015 () rs orientation: forward

Symbol	Name	Function Class
Il10ra	interleukin 10 receptor, alpha	within coordinates
Mir7086	microRNA 7086	926 bp downstream
Tssr84758	transcription start site region 84758	822 bp downstream
Tssr89257	transcription start site region 89257	1527 bp upstream
Tssr89258	transcription start site region 89258	1483 bp upstream
Tssr89259	transcription start site region 89259	1466 bp upstream