rs49589193 SNP Detail

Summary

• ID
  rs49589193
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42453524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGAGGTA AGCAAAGCAG
  AGGCAGAGGC TTACCAGTGG CCCTGGGCCT CGGGTGTGGG TGTGGGAGGG ATGCTGGTTC
  CTGCTTCTTC AATGTCTCCA GCTCTTAGTC CAGAGTCTCC TAAGGGACAG AGTTCTTAGT
  GACCTAAAGC TGCTGCTGCT GCTGCTGCTG CTGCTGCTGT GTCTCCCCTA CTGAGATTCC
  Y
  AGAGAGGTCA CTAGGCCTAA GCATGTCTCT GTCCACAGCG TGGGTATTGC TATCAAGTCT
  GCCTTTTGAT TGTAGAGGTG AAGAAATAAA TGGTTGCATG GACTGGATTG AGTCTATTTT
  GGCCTCTACT CCCAGGGAAA ACTGAAGTCA AACAAGACGG GATGAAGAAG GGACCTTTGT
  GGTAGCATCC TAGGGAAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52629875	NES15518698	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49589193					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52629875	NES15518698	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42453524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5505	CpG island 5505	1502 bp proximal
D13Mit138	DNA segment, Chr 13, Massachusetts Institute of Technology 138	757 bp proximal
Edn1	endothelin 1	1428 bp upstream
Gm60910	predicted gene, 60910	within coordinates
Rr388326	regulatory region 388326	within coordinates
Rr478143	regulatory region 478143	959 bp distal
Rr478144	regulatory region 478144	324 bp proximal
Rr478145	regulatory region 478145	700 bp proximal
Rr478146	regulatory region 478146	1295 bp proximal
Tssr119437	transcription start site region 119437	1217 bp upstream
Tssr119438	transcription start site region 119438	1376 bp upstream
Tssr119439	transcription start site region 119439	1398 bp upstream
Tssr119440	transcription start site region 119440	1461 bp upstream
Tssr119441	transcription start site region 119441	1564 bp upstream
Tssr119442	transcription start site region 119442	1734 bp upstream
Tssr119443	transcription start site region 119443	1775 bp upstream
Tssr119444	transcription start site region 119444	1905 bp upstream