rs49590419 SNP Detail

Summary

• ID
  rs49590419
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122036784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTCTGACT CTGGCCTCTC ACCTCTACCC AGCATGCTCT
  GCGTCCTGTT CTGGAGACTG GGGATAAATA GCATTGCTGC TGGCTGCTTC TCCAATCGCA
  K
  CCCTATCTGT CCTGTGCTGT GACATTTATA CTATCATAGT TCATCTACAA ACCCGTCACT
  CCCAACTGCC ACCAAGAGGT TTTAAAAAAT AGCTCTTTA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320909870	CHEV_3_121946053	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49590419					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122036784 () rs orientation: forward

Symbol	Name	Function Class
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	within coordinates
Rr375675	regulatory region 375675	within coordinates
Rr584261	regulatory region 584261	21 bp distal
Rr584262	regulatory region 584262	within coordinates
Rr584263	regulatory region 584263	63 bp proximal
Rr584264	regulatory region 584264	718 bp proximal
Rr584265	regulatory region 584265	1607 bp proximal
Tssr31477	transcription start site region 31477	6 bp downstream