rs49590426 SNP Detail

Summary

• ID
  rs49590426
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77544945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGTCGTG TCTGTTTCTA
  TTCCGGGAGG CAGAGCTGAC GGGCCCCAAC AGATGCAGCC CTTGGAATGC ATCAGGGACA
  GGGAGCGGGC ACAGCTGATT CTCACCCTTA GCCAGTAGTC CTGTGGGATC CCAGTCCTGG
  GCCATGACAG TGATGCTTCA GCACACGTGC GCACTCAGGG TGGTGGGCAG TGGGAAGAGC
  R
  CTCTCACACA AGTGACCACT GTCTGCAGGC TTTGCCCAGA AACCAGGTTT CTTTGAGGAG
  AGGAATGATT TTATGTAAAG TCAGTACTTT GACACAGACT TGCCCACTTC CCGGTGAGGG
  CACAGTTAGG TTTTCAGTTC TTGGCAACAT CAGCCCAGTG GTTCTAGATG TATTTTTGGA
  TTGTGTATTT TTTTTTCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61429410	NES16808715	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49590426					SNP	A	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61429410	NES16808715	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77544945 () rs orientation: forward

Symbol	Name	Function Class
Gm68532	predicted gene, 68532	836 bp upstream
Klhl31	kelch-like 31	within coordinates
Rr683389	regulatory region 683389	1153 bp distal
Rr683390	regulatory region 683390	847 bp distal
Rr683391	regulatory region 683391	660 bp distal
Rr683392	regulatory region 683392	within coordinates
Tssr86194	transcription start site region 86194	1183 bp downstream
Tssr86195	transcription start site region 86195	1135 bp downstream
Tssr86196	transcription start site region 86196	1116 bp downstream
Tssr86197	transcription start site region 86197	1053 bp downstream
Tssr86198	transcription start site region 86198	1043 bp downstream
Tssr86199	transcription start site region 86199	1028 bp downstream
Tssr86200	transcription start site region 86200	952 bp downstream
Tssr86201	transcription start site region 86201	931 bp downstream