rs49590578 SNP Detail

Summary

• ID
  rs49590578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115049655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTT ACAGAACAGC CAGAGCTATA
  Y
  GGAGAAACCC TGTCTCAGAT AAACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149118826	ENSMUSSNP450724	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321653762	CHEV_5_115361603	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49590578					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115049655 () rs orientation: forward

Symbol	Name	Function Class
Oasl2	2'-5' oligoadenylate synthetase-like 2	within coordinates
Rr618060	regulatory region 618060	1100 bp distal
Tssr48138	transcription start site region 48138	1685 bp downstream
Tssr48139	transcription start site region 48139	572 bp downstream
Tssr48140	transcription start site region 48140	538 bp downstream
Tssr48141	transcription start site region 48141	321 bp downstream
Tssr48142	transcription start site region 48142	231 bp downstream
Tssr48143	transcription start site region 48143	188 bp downstream
Tssr48144	transcription start site region 48144	148 bp downstream
Tssr48145	transcription start site region 48145	81 bp downstream
Tssr48146	transcription start site region 48146	15 bp downstream
Tssr48147	transcription start site region 48147	within coordinates
Tssr48148	transcription start site region 48148	50 bp upstream
Tssr48149	transcription start site region 48149	77 bp upstream
Tssr48150	transcription start site region 48150	88 bp upstream
Tssr48151	transcription start site region 48151	106 bp upstream
Tssr48152	transcription start site region 48152	188 bp upstream
Tssr48153	transcription start site region 48153	278 bp upstream
Tssr48154	transcription start site region 48154	290 bp upstream
Tssr52739	transcription start site region 52739	591 bp upstream