rs49590739 SNP Detail

Summary

• ID
  rs49590739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:32188005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACAGTTT CACCTTTCAA
  AAACCAACTC TAGGGAAGTC CGACAACCTC AAACTGAAAC CACTTGTATG CGGGTTGTAG
  ATTATACACT TGGAACTTCA GGGCTAGTAG CATCACACCG AATTTGGCGC ATTTGTTGAT
  TTGCCTGCCT TGCCTGCCCT ACCGATTCAG AACCACACAG TCCCAGCAAC CGCATTGCCA
  Y
  TAGGCAGTAT CTAGTTTAGC ACTGAAGCCC ATCTAGTGAG TCATTCCCTT GACATCGCTT
  GGCGGAGGAA ATCCCACTGG TGATCACAGA GCGCTCTGTG GAAGCCAAGC ACGGCTTGCT
  CCTTGCCTAC TTTTCCTGGA GTCCCACCAT CTGGCGCTGC TACAACGCAT CACCCTGGAG
  AAAATCTTAA CGAACTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss63246544	NES17481722	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs49590739					SNP	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63246544	NES17481722	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32188005 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10757	CpG island 10757	51 bp proximal
Gm50210	predicted gene, 50210	1332 bp upstream
Sgms1	sphingomyelin synthase 1	within coordinates
Tssr158859	transcription start site region 158859	461 bp upstream
Tssr158860	transcription start site region 158860	364 bp downstream
Tssr158861	transcription start site region 158861	411 bp downstream